Publications

Peer-reviewed publications

The following list has not been updated since 2018. Please refer to Google Scholar or Pubmed for updated publications.

Google Scholar

Pubmed

2018

  1. Yun, E.J., Lee, J., Kim, D.H., Kim, J., Kim, S., Jin, Y. S., Kim, K. H. (2018) Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica. Journal of Biotechnology 272/273, 7-13.
  2. Liu, J. J., Zhang,  G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H., Jin,  Y. S. (2018) A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii. Applied and Environmental Microbiology 84, e02858-17
  3. Wei, L. J., Kwak, S., Liu, J. J., Lane, S., Hua, Q., Kweon, D. H., Jin,  Y. S. (2018) Improved squalene production through increasing lipid contents in Saccharomyces cerevisiae. Biotechnology & Bioengineering 115, 1793-1800.
  4. Lane, S., Dong, J. Jin, Y. S. (2018) Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae. Bioresource Technology 260, 380-394.
  5. Kim, H., Oh, E. J., Lane, S. T., Lee, W. H., Cate, J. H. D., Jin, Y. S. (2018) Enhanced cellobiose fermentation by engineered Saccharomyces cerevisiae expressing a mutant cellodextrin facilitator and cellobiose phosphorylase. Journal of Biotechnology 275, 53-59.
  6. Zhang, Z.T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y.S., Blaschek, H.P., Wang, Y. (2018) Bacterial genome editing with CRISPR-Cas9: taking Clostridium beijerinckii as an example. Methods in Molecular Biology 1772, 297-325.
  7. Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., Kim, K. H., Jin, Y. S. (2018) Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass. Biotechnology for Biofuels 11, 140
  8. Kim, J. S., Daum, M. A., Jin, Y. S., Miller, M. J. (2018) Yeast derived LysA2 can control bacterial contamination in ethnaol fermentation. Viruses 10, E281
  9. Seo, S. O., Lu, T., Jin, Y. S., Blaschek, H. P. (2018) Development of an oxygen-independent flavin mononucleotide-based fluorescent reporter system in Clostridium beijerinckii and its potential applications. Journal of Biotechnology 265, 119-126
  10. Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., Jin, Y. S., Kweon, D. H., Sohn, J. H. (2018) Direct fermentation of Jerusalem artichoke tuber powder for production of l-lactic acid and d-lactic acid by metabolically engineered Kluyveromyces marxianus. Journal of Biotechnology 266, 27-33
  11. Kong, I. I., Turner, T. L., Kim, H., Kim, S. R., and Jin, Y. S. (2018) Phenotypic evaluation and characterization of 21 industrial Saccharomyces cerevisiae yeast strains. FEMS Yeast Research, in press (doi: 10.1093/femsyr/foy001)
  12. Lane, S., Xu, H., Oh, E. J., Kim, H., Lesmana, A., Jeong, D., Zhang, G., Tsai, C. S., Jin, Y. S. and Kim, S. R. (2018) Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae. Scientific Reports 8, 2613
  13. Xia, P. F., Li, Q., Tan, L. R., Liu, M. M., Jin, Y. S., and Wang S. G. (2018) Synthetic whole-cell biodevices for targeted degradation of antibiotics. Scientific Reports 8, 2906

2017 

  1. Jin, Y. S., and Cate, J. H. (2017) Metabolic engineering of yeast for lignocellulosic biofuel production. Current Opinion in Chemical Biology 41, 99-106
  2. Kwak S., Kim S. R., Xu, H., Zhang, G. C., Lane, S., Kim, H., and Jin, Y. S. (2017) Enhanced isoprenoid production from xylose by engineered Saccharomyces cerevisiae. Biotechnology and Bioengineering, in press (doi: 10.1002/bit.26369)
  3. Lee, W.H., and Jin, Y. S. (2017) Evaluation of ethanol production activity by engineered Saccharomyces cerevisiae fermenting cellobiose through phosphorolytic pathway in simultaneous saccharification and fermentation of cellulose. Journal of Microbiology and Biotechnology, in press (doi: 10.4014/jmb.1705.05039)
  4. Seo, S. O., Janssen, H., Magis, A., Wang, Y., Lu, T., Price, N. D., Jin, Y. S., and Blaschek, H. (2017) Genomic, transcriptional and phenotypic analysis of the glucose derepressed Clostridium beijerinckii mutant exhibiting acid crash phenotype. Biotechnology Journal, in press (doi:10.1002/biot.201700182)
  5. Oh, E. J., Kwak, S. R., Kim, H., and Jin, Y. S. (2017) Transporter engineering for cellobiose fermentation under lower pH conditions by engineered Saccharomyces cerevisiae. Bioresource Technology, in press (doi:10.1016/j.biortech.2017.05.138)
  6. Sung, J., Kim, S., Cabatbat, J. J., Jang, S., Jin, Y. S., Jung, G. Y., Chia, N., and Kim, P. J. (2017) Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis. Nature Communications 8, 15393
  7. Jo, J. H., Park, Y. C., Jin, Y. S., and Seo, J. H. (2017) Construction of efficient xylose-fermenting Saccharomyces cerevisiae through a synthetic isozyme system of xylose reductase from Scheffersomyces stipites. Bioresource Technology 241, 88-94
  8. Kwak, S. R., and Jin, Y. S. (2017) Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: A review and perspective. Microbial Cell Factories 16, 82
  9. Jang, Y. J., Seo, S.O., Kim, S. A., Li, L., Kim, T. J., Kim, S. C., Jin, Y. S., and Han, N. S. (2017) Elimination of the cryptic plasmid in Leuconostoc citreum by CRISPR/Cas9 system. Journal of Biotechnology 251, 151-155
  10. Kim, S. K., Jo, J. H., Park, Y. S., Jin, Y.S., and Seo, J. H. (2017) Metabolic engineering of Saccharomyces cerevisiae for production of spermidine under optimal culture conditions. Enzyme and Microbial Technology 101, 30-35
  11. Kim, S. R., Skerker, J., Kong, I. I., Kim, H., Maurer, M., Zhang, G. C., Peng, D., Arkin, A., Jin, Y. S. Metabolic engineering of a haploid strain derived from a triploid industrial yeast for producing cellulosic ethanol. Metabolic Engineering 40, 176-185
  12. Lee, W.H., Jin, Y. S. (2017) Improved ethanol production by engineered Saccharomyces cerevisiae expressing a mutated cellobiose transporter during simultaneous saccharification and fermentation. Journal of Biotechnology 245, 1-8
  13. Kim, S. K., Jo, J. H., Jin, Y. S., Seo, J. H. (2017) Enhanced ethanol fermentation by engineered Saccharomyces cerevisiae strains with high spermidine contents. Bioprocess and Biosystems Engineering 40, 683-691
  14. Zhang, G. C., Turner, T. L., Jin, Y. S. (2017) Enhanced xylose fermentation by engineered yeast expressing NADH oxidase through high cell density inoculums. Journal of Industiral Microbiology and Biotechnology 44, 387-395
  15. Seo, S. O., Wang, Y., Lu, T., Jin, Y. S., and Blaschek, H. P. (2017) Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production. Biotechnology and Bioengineering 114, 106-112
  16. Lee, Y. J., Jin, Y. S., Cha, Y. L., and Seo, J. H. (2017) Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae. Bioresource Technology 228, 355-361
  17. Turner, T. L., Kim, E., Hwang, C., Zhang, G., Liu, J., and Jin, Y. S. (2017) Conversion of lactose and whey into lactic acid by engineered yeast. Journal of Dairy Science 100, 124-128
  18. Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J., Kim, H., Ort, D., Wang, S. G., and Jin, Y. S. (2017) Recycling carbon dioxide during xylose fermentation by engineered Saccharomyces cerevisiae. ACS Synthetic Biology 6, 276-283

2016 

  1. Park, J., Wang, Z., Lee, W. H., Jameel, H., Jin, Y. S., and Park, S. (2016) Effect of the two-stage autohydrolysis of hardwood on the enzymatic saccharification and subsequent fermentation with an efficient xylose-utilizing Saccharomyces cerevisiae. BioResources 11, 9584-9595
  2. Jayakody, L. N., Lane, S., Kim, H., and Jin, Y. S. (2016) Mitigating health risks associated with alcoholic beverages through metabolic engineering. Current Opinion in Biotechnology 37, 173-181
  3. Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S., and Kweon, D. H. (2016) Fumarate-mediated persistence of Escherichia coli against antibiotics. Antimicrobial Agents and Chemotherapy 60, 2232-2240
  4. Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S., and Cate, J. H. D. (2016) Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae. Biotechnology Reports 9, 53-56
  5. Liu, J. J., Kong, I. I., Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V., and Jin, Y. S. (2016) Metabolic engineering of probiotic Saccharomyces boulardii. Applied and Environmental Microbiology 82, 2280-2287
  6. Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S., and Seo, J. H. (2016) Recent advances in biological production of sugar alcohols. Current Opinion in Biotechnology 37, 105-113
  7. Seo, J. H., and Jin, Y. S. (2016) Editorial overview: Food biotechnology: Critical gap filler in the nexus of food, energy, and waste for a prosperous future. Current Opinion in Biotechnology 37, 4-7
  8. Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, I. I., Sung, B. H., Sohn, J. H., Wang, S. G., and Jin, Y. S. (2016) GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae. Biotechnology and Bioengineering 113, 2149-2155
  9. Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R., and Jin, Y. S. (2016) PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae. Metabolic Engineering 34, 88-96
  10. Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P., and Jin, Y. S. (2016) Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 82, 3631-3639
  11. Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Bacterial genome editing with CRISPR-Cas9: Deletion, integration, single nucleotide modification, and desirable “clean” mutant selection in Clostridium beijerinckii as an example. ACS Synthetic Biology 15, 721-732
  12. Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., and Jin, Y. S. (2016) Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae. Journal of Biotechnology 229, 13-21
  13. Bode, L., Contractor, N., Barile, D., Pohl, P., Prudden, A., Boons, G.-J., Jin, Y. S., and Jennewein, S. (2016) Human Milk Oligosaccharides: Challenges and opportunities Nutrition Reviews 74, 635-44
  14. Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. (2016) Gene transcription repression in Clostridium beijerinckii using CRISPR-dCas9. Biotechnology and Bioengineering 113, 2739-2743
  15. Zhang, G. C., Kong, I. I., Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H., and Jin, Y. S. (2016) Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast. Biotechnology and Bioengineering 113, 2587-2596
  16. Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L., and Jin, Y. S. (2016) Lactose fermentation by engineered Saccharomyces cerevisiae capable of fermenting cellobiose. Journal of Biotechnology 234, 99-104
  17. Kim, J. W., Kim, J., Seo, S. O., Kim, K. H., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol by engineered Saccharomyces cerevisiae through fine-tuning of pyruvate decarboxylase and NADH oxidase activities. Biotechnology for Biofuels 9, 265
  18. Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose. Biotechnology Journal 11, 1424-1432
  19. Park, J., Wang, Z., Lee, W. H., Jameel, H., Jin, Y. S., and Park, S. (2016) Effect of the two-stage autohydrolysis of hardwood on the enzymatic saccharification and subsequent fermentation with an efficient xylose-utilizing Saccharomyces cerevisiae. BioResources 11, 9584-9595

2015

  1. Kim, J. W., Seo, S. O., Zhang, G. C., Jin, Y. S., and Seo, J. H. (2015) Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient Saccharomyces cerevisiae. Bioresource Technology 191, 512-519
  2. Kim, S., Sung, J., Foo, M., Jin, Y. S., and Kim, P. J. (2015) Uncovering the nutritional landscape of food. PLoS ONE 10, e0118697
  3. Kim, S. K., Jin, Y. S., Choi, I. G., Park, Y. C., and Seo, J. H. (2015) Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. Metabolic Engineering 29, 46-55
  4. Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K., and Singh, V. (2015) Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield. Bioresource Technology 183, 70-77
  5. Kim, S. R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E. J., Zhang, G., Kim, K. H., and Jin, Y. S. (2015) Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae. Applied and Environmental Microbiology 81, 1601-1609
  6. Lane, S., Zhang, S., Wei, N., Rao, C., and Jin, Y. S. (2015) Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica. Biotechnology and Bioengineering 112, 1012-1022
  7. Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B., and Mills, D. A. (2015) Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants. Microbiome 3, 13
  8. Li, X., Yu, V. Y., Lin, Y., Chomvong, K., Estrela, R., Park, A., Liang, J. M., Znameroski, E. A., Feehan, J., Kim, S. R., Jin, Y. S., Louise Glass, N., and Cate, J. H. D. (2015) Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. eLife 4, 1-55
  9. Liao, C., Seo, S. O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y. S., and Lu, T. (2015) Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum. Proceedings of the National Academy of Sciences of the United States of America 112, 8505-8510
  10. Quarterman, J., Kim, S. R., Kim, P. J., and Jin, Y. S. (2015) Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening. Journal of Biotechnology 194, 48-57
  11. Tsai, C. S., Kong, I. I., Lesmana, A., Million, G., Zhang, G. C., Kim, S. R., and Jin, Y. S. (2015) Rapid and marker-free refactoring of xylose-fermenting yeast strains with Cas9/CRISPR. Biotechnology and Bioengineering 112, 2406-2411
  12. Tsai, C. S., Kwak, S., Turner, T. L., and Jin, Y. S. (2015) Yeast synthetic biology toolbox and applications for biofuel production. FEMS Yeast Research 15, 1-15
  13. Turner, T. L., Zhang, G. C., Kim, S. R., Subramaniam, V., Steffen, D., Skory, C. D., Jang, J. Y., Yu, B. J., and Jin, Y. S. (2015) Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion. Applied Microbiology and Biotechnology 99, 8023-8033
  14. Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I., and Jin, Y. S. (2015) Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae. Biotechnology and Bioengineering 113, 1075-1083
  15. Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S., and Blaschek, H. P. (2015) Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. Journal of Biotechnology 200, 1-5
  16. Wei, N., Oh, E. J., Million, G., Cate, J. H. D., and Jin, Y. S. (2015) Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. ACS Synthetic Biology 4, 707-713
  17. Yun, E. J., Kwak, S., Kim, S. R., Park, Y. C., Jin, Y. S., and Kim, K. H. (2015) Production of (S)-3-hydroxybutyrate by metabolically engineered Saccharomyces cerevisiae. Journal of Biotechnology 209, 23-30
  18. Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S., and Jin, Y. S. (2015) Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. Current Opinion in Chemical Biology 29, 49-57

2014 

  1. Bae, Y. H., Kang, K. H., Jin, Y. S., and Seo, J. H. (2014) Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae. Journal of Biotechnology 169, 34-41
  2. Chomvong, K., Kordić, V., Li, X., Bauer, S., Gillespie, A. E., Ha, S. J., Oh, E. J., Galazka, J. M., Jin, Y. S., and Cate, J. H. D. (2014) Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. Biotechnology for Biofuels 7, 85
  3. Kim, H., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2014) Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation. Applied Microbiology and Biotechnology 98, 1087-1094
  4. Kim, S. J., Seo, S. O., Park, Y. C., Jin, Y. S., and Seo, J. H. (2014) Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae. Journal of Biotechnology 192, 376-382
  5. Kim, S. R., and Jin, Y. S. (2014) Metabolic engineering of Saccharomyces cerevisiae for redox balance of xylose fermentation. Current Research on Agriculture and Life Sciences 32, 199-202
  6. Kim, T. Y., Oh, E. J., Jin, Y. S., and Oh, M. K. (2014) Improved resistance against oxidative stress of engineered cellobiose-fermenting Saccharomyces cerevisiae revealed by metabolite profiling. Biotechnology and Bioprocess Engineering 19, 951-957
  7. Lin, Y., Chomvong, K., Acosta-Sampson, L., Estrela, R., Galazka, J. M., Kim, S. R., Jin, Y. S., and Cate, J. H. (2014) Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae. Biotechnology for Biofuels 7, 126
  8. Nan, H., Seo, S. O., Oh, E. J., Seo, J. H., Cate, J. H. D., and Jin, Y. S. (2014) 2,3-Butanediol production from cellobiose by engineered Saccharomyces cerevisiae. Applied Microbiology and Biotechnology 98, 5757-5764
  9. Zhang, G. C., Kong, I. I., Kim, H., Liu, J. J., Cate, J. H. D., and Jin, Y. S. (2014) Construction of a quadruple auxotrophic mutant of an industrial polyploid Saccharomyces cerevisiae strain by using RNA-guided Cas9 nuclease. Applied and Environmental Microbiology 80, 7694-7701

2013

  1. Guo, B., Zhang, Y., Yu, G., Lee, W. H., Jin, Y. S., and Morgenroth, E. (2013) Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. Applied Biochemistry and Biotechnology 169, 1069-1087
  2. Ha, S. J., Galazka, J. M., Joong Oh, E., Kordić, V., Kim, H., Jin, Y. S., and Cate, J. H. D. (2013) Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering 15, 134-143
  3. Ha, S. J., Kim, H., Lin, Y., Jang, M. U., Galazka, J. M., Kim, T. J., Cate, J. H. D., and Jin, Y. S. (2013) Single amino acid substitutions in 4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 79, 1500-1507
  4. Ha, S. J., Kim, S. R., Kim, H., Du, J., Cate, J. H. D., and Jin, Y. S. (2013) Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae. Bioresource Technology 149, 525-531
  5. Kim, H. J., Lee, H. R., Kim, C. S., Jin, Y. S., and Seo, J. H. (2013) Investigation of protein expression profiles of erythritol-producing Candida magnoliae in response to glucose perturbation. Enzyme and Microbial Technology 53, 174-180
  6. Kim, H. J., Turner, T. L., and Jin, Y. S. (2013) Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals. Biotechnology Advances 31, 976-985
  7. Kim, S. J., Seo, S. O., Jin, Y. S., and Seo, J. H. (2013) Production of 2,3-butanediol by engineered Saccharomyces cerevisiae. Bioresource Technology 146, 274-281
  8. Kim, S. R., Kwee, N. R., Kim, H., and Jin, Y. S. (2013) Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase (GRE3), xylitol dehydrogenase (XYL2), and xylulokinase (XYL3) from Scheffersomyces stipitis. FEMS Yeast Research 13, 312-321
  9. Kim, S. R., Lee, K. S., Kong, I. I., Lesmana, A., Lee, W. H., Seo, J. H., Kweon, D. H., and Jin, Y. S. (2013) Construction of an efficient xylose-fermenting diploid Saccharomyces cerevisiae strain through mating of two engineered haploid strains capable of xylose assimilation. Journal of Biotechnology 164, 105-111
  10. Kim, S. R., Park, Y. C., Jin, Y. S., and Seo, J. H. (2013) Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnology Advances 31, 851-861
  11. Kim, S. R., Skerker, J. M., Kang, W., Lesmana, A., Wei, N., Arkin, A. P., and Jin, Y. S. (2013) Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS ONE 8, e57048
  12. Lee, K. S., Kim, J. S., Heo, P., Yang, T. J., Sung, Y. J., Cheon, Y., Koo, H. M., Yu, B. J., Seo, J. H., Jin, Y. S., Park, J. C., and Kweon, D. H. (2013) Characterization of Saccharomyces cerevisiae promoters for heterologous gene expression in Kluyveromyces marxianus. Applied Microbiology and Biotechnology 97, 2029-2041
  13. Lee, W. H., Kim, M. D., Jin, Y. S., and Seo, J. H. (2013) Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation. Applied Microbiology and Biotechnology 97, 2761-2772
  14. Lee, W. H., Nan, H., Kim, H. J., and Jin, Y. S. (2013) Simultaneous saccharification and fermentation by engineered Saccharomyces cerevisiae without supplementing extracellular β-glucosidase. Journal of Biotechnology 167, 316-322
  15. Li, S., Ha, S. J., Kim, H. J., Galazka, J. M., Cate, J. H. D., Jin, Y. S., and Zhao, H. (2013) Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. Journal of Biotechnology 168, 1-6
  16. Oh, E. J., Ha, S. J., Rin Kim, S., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metabolic Engineering 15, 226-234
  17. Wang, Y., Li, X., Milne, C. B., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y. S., Price, N. D., and Blaschek, H. P. (2013) Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii. Applied and Environmental Microbiology 79, 5853-5863
  18. Wei, N., Quarterman, J., and Jin, Y. S. (2013) Marine macroalgae: An untapped resource for producing fuels and chemicals. Trends in Biotechnology 31, 70-77
  19. Wei, N., Quarterman, J., Kim, S. R., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced biofuel production through coupled acetic acid and xylose consumption by engineered yeast. Nature Communications 4, 2580
  20. Wei, N., Xu, H., Kim, S. R., and Jin, Y. S. (2013) Deletion of FPS1, encoding aquaglyceroporin Fps1p, improves xylose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 79, 3193-3201

2012 

  1. Cha, C., Kim, S. R., Jin, Y. S., and Kong, H. (2012) Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnology and Bioengineering 109, 63-73
  2. Guo, B., Zhang, Y., Ha, S. J., Jin, Y. S., and Morgenroth, E. (2012) Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technology 110, 278-287
  3. Jin, Y. S., and Cate, J. H. D. (2012) Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnology Journal 7, 328-329
  4. Kim, S. R., Ha, S. J., Kong, I. I., and Jin, Y. S. (2012) High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae. Metabolic Engineering 14, 336-343
  5. Kim, S. R., Ha, S. J., Wei, N., Oh, E. J., and Jin, Y. S. (2012) Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. Trends in Biotechnology 30, 274-282
  6. Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S., and Seo, J. H. (2012) Whole cell biosynthesis of a functional oligosaccharide, 2′-fucosyllactose, using engineered Escherichia coli. Microbial Cell Factories 11, 48
  7. Lee, W. H., Seo, S. O., Bae, Y. H., Nan, H., Jin, Y. S., and Seo, J. H. (2012) Isobutanol production in engineered Saccharomyces cerevisiae by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-1475

2010-2011 

  1. Ha, S. J., Wei, Q., Kim, S. R., Galazka, J. M., Cate, J., and Jin, Y. S. (2011) Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae Applied and Environmental Microbiology 77, 5822-5825
  2. Kim, J. S., Heo, P., Yang, T. J., Lee, K. S., Jin, Y. S., Kim, S. K., Shin, D., and Kweon, D. H. (2011) Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochemical and Biophysical Research Communications 413, 105-110
  3. Lee, K. S., Hong, M. E., Jung, S. C., Ha, S. J., Yu, B. J., Koo, H. M., Park, S. M., Seo, J. H., Kweon, D. H., Park, J. C., and Jin, Y. S. (2011) Improved galactose fermentation of Saccharomyces cerevisiae through inverse metabolic engineering. Biotechnology and Bioengineering 108, 621-631
  4. Lu, C. H., Choi, J. H., Engelmann Moran, N., Jin, Y. S., and Erdman, J. W. (2011) Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered Escherichia coli. Journal of Agricultural and Food Chemistry 59, 9996-10005
  5. Milne, C. B., Eddy, J. A., Raju, R., Ardekani, S., Kim, P. J., Senger, R. S., Jin, Y. S., Blaschek, H. P., and Price, N. D. (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Systems Biology 5, 130
  6. Ha, S. J., Kim, S. R., Choi, J. H., Park, M. S., and Jin, Y. S. (2011) Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction in vitro. Applied Microbiology and Biotechnology 92, 77-84
  7. Ha, S. J., Galazka, J. M., Kim, S. R., Choi, J. H., Yang, X., Seo, J. H., Glass, N. L., Cate, J. H. D., and Jin, Y. S. (2011) Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proceedings of the National Academy of Sciences of the United States of America 108, 516-521
  8. Kim, S. R., Lee, K. S., Choi, J. H., Ha, S. J., Kweon, D. H., Seo, J. H., and Jin, Y. S. (2010) Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient Saccharomyces cerevisiae engineered for xylose metabolism. Journal of Biotechnology 150, 404-407

Before joining University of Illinois at Urbana-Champaign

  1. Jung, S. C., Smith, C. L., Lee, K. S., Hong, M. E., Kweon, D. H., Stephanopoulos, G., and Jin, Y. S. (2010) Restoration of growth phenotypes of Escherichia coli DH5α in minimal media through reversal of a point mutation in purB. Applied and Environmental Microbiology 76, 6307-6309
  2. Hong, M. E., Lee, K. S., Yu, B. J., Sung, Y. J., Park, S. M., Koo, H. M., Kweon, D. H., Park, J. C., and Jin, Y. S. (2010) Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering. Journal of Biotechnology 149, 52-59
  3. Tyo, K. E. J., Espinoza, F. A., Stephanopoulos, G., and Jin, Y. S. (2009) Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in Synechocystis PCC 6803. Biotechnology Progress 25, 1236-1243
  4. Shin, J. Y., Shin, J. I., Kim, J. S., Yang, Y. S., Hwang, Y., Yang, J. S., Shin, D., Seo, J. H., Jin, Y. S., Park, Y. C., Hwang, J. S., and Kweon, D. H. (2009) Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochemical and Biophysical Research Communications 388, 217-221
  5. Lee, K., Shin, J. Y., Yang, Y. S., Shin, J. I., Park, Y. C., Seo, J. H., Park, T. H., Shin, C. S., Jin, Y. S., and Kweon, D. H. (2009) Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enzyme and Microbial Technology 44, 217-222
  6. Lee, J., Seo, E., Kweon, D. H., Park, K., and Jin, Y. S. (2009) Fermentation of rice bran and defatted rice bran for butanol production using Clostridium beijerinckii NCIMB 8052. Journal of Microbiology and Biotechnology 19, 482-490
  7. Lee, K. S., Shin, J. Y., Jang, Y. H., Kweon, D. H., Park, K. M., and Jin, Y. S. (2008) Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. KSBB Journal 23, 59-64
  8. Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS Journal 275, 3051-3063
  9. Jung, S. C., Chung, C. Y., Kim, J. S., Kweon, D. H., Park, K. M., and Jin, Y. S. (2007) Policosanol production from rice bran oil byproducts. Food Engineering Progress 11, 337-347

Before joining Sungkyunkwan University

  1. Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metabolic Engineering 9, 337-347
  2. Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y. S., Passoth, V., and Richardson, P. M. (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nature Biotechnology 25, 319-326
  3. Laplaza, J. M., Torres, B. R., Jin, Y. S., and Jeffries, T. W. (2006) Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enzyme and Microbial Technology 38, 741-747
  4. Kim, J. S., Lee, K. W., Jin, Y. S., Yoo, S. J., Jung, K. Y., Lee, J. W., Lee, S. Y., and Hwang, D. H. (2006) Standardization on metabolic and biological pathway. Bioinformatics and Biosystems 1, 196-200
  5. Jin, Y. S., Cruz, J., and Jeffries, T. W. (2005) Xylitol production by a Pichia stipitis D-xylulokinase mutant. Applied Microbiology and Biotechnology 68, 42-45
  6. Jin, Y. S., Alper, H., Yang, Y. T., and Stephanopoulos, G. (2005) Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Applied and Environmental Microbiology 71, 8249-8256
  7. Alper, H.*, Jin, Y. S.*, Moxley, J. F., and Stephanopoulos, G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metabolic Engineering 7, 155-164 *equal contribution
  8. Jin, Y. S., Laplaza, J. M., and Jeffries, T. W. (2004) Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Applied and Environmental Microbiology 70, 6816-6825
  9. Jin, Y. S., and Jeffries, T. W. (2004) Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metabolic Engineering 6, 229-238
  10. Jeffries, T. W., and Jin, Y. S. (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. Applied Microbiology and Biotechnology 63, 495-509
  11. Jin, Y. S., Ni, H., Laplaza, J. M., and Jeffries, T. W. (2003) Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Applied and Environmental Microbiology 69, 495-503
  12. Jin, Y. S., and Jeffries, T. W. (2003) Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Applied Biochemistry and Biotechnology 106, 277-286
  13. Jin, Y. S., Jones, S., Shi, N. Q., and Jeffries, T. W. (2002) Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Applied and Environmental Microbiology 68, 1232-1239
  14. Jin, Y. S., Lee, T. H., Choi, Y. D., Ryu, Y. W., and Seo, J. H. (2000) Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. Journal of Microbiology and Biotechnology 10, 564-567

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